geniml
No security findings. Scanned 1 time, most recently 2026-10-21.
Second scanner: NVIDIA SkillSpector
SkillSpector found no issues but could not fully inspect the package, usually because SKILL.md refers to a file that is not present, so it fails closed to CAUTION instead of SAFE. Read it as "not fully checked", not as a finding. How the two scanners compare across the whole corpus: Two scanners, one corpus.
What this skill does
Supports audited local Geniml genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEmbed runs, inspect model/tokenizer compatibility, and assess consensus universes.
- Package
- 14 files, 168 KB
- SKILL.md
- 1891 words, 12+ sections
- Code
- Python (8)
- Allowed tools
ReadWriteEditBashGlob- License
- MIT
- Compatibility
- Requires Python 3.12 and uv for the tested geniml 0.8.4 / gtars 0.10.0 stack; scEmbed needs AnnData 0.12.19 with Zarr 2.18.7 and the listed ML packages. Bundled planners and inspectors are dependency-free, local-only, and make no network requests.
SKILL.md covers: Geniml · Verified release snapshot · Install reproducibly · Start with the safety gate · Coordinate and assembly contract · Current API map · Region and tokenizer I/O · Region2Vec · scEmbed · BEDspace · Consensus universes and assessment · Important 0.8.4 migration notes
Findings
No findings. SAFE
What is in the package
| File | Kind | Size |
|---|---|---|
SKILL.md | doc | 16 KB |
references/bedspace.md | doc | 10 KB |
references/consensus_peaks.md | doc | 11 KB |
references/region2vec.md | doc | 11 KB |
references/scembed.md | doc | 13 KB |
references/utilities.md | doc | 18 KB |
scripts/__init__.py | script | 58 B |
scripts/_common.py | script | 13 KB |
scripts/bed_validator.py | script | 11 KB |
scripts/consensus_plan.py | script | 14 KB |
scripts/corpus_auditor.py | script | 10 KB |
scripts/embedding_plan.py | script | 17 KB |
scripts/model_artifact_inspector.py | script | 12 KB |
scripts/tokenizer_compatibility.py | script | 11 KB |
External hosts referenced
docs.bedbase.org github.com doi.org pypi.org api.bedbase.org arxiv.org anndata.readthedocs.io export.arxiv.org python-client.qdrant.tech
Hostnames that appear in the skill's files. Referencing a host is not a finding; compare against the findings above and the skill's stated purpose.
Environment variables referenced
BBCLIENT_CACHE BEDBASE_API DEFAULT_BEDBASE_API
Package contents recorded 2026-10-22 at commit 593377bb0487. The scan above ran against the version current at scan time; the two can differ if the skill has since been updated.
What we checked
- Static analyzer. Pattern rules over SKILL.md and bundled files: known-bad commands, exfiltration URLs, secrets, obfuscation.
- Bytecode analyzer.
- Pipeline analyzer.
- Correlation analyzer.
- Behavioral analyzer. Checks what the skill asks the agent to do against what its description claims it does.
- Trigger analyzer. Looks for instructions that fire on conditions the user did not ask for.
What we did not check
- Runtime behaviour. The skill was not executed; findings come from reading its files.
- Anything fetched at install or run time, including remote scripts, package dependencies, and URLs the skill tells the agent to open.
- Content the analyzers cannot read: images, binaries, and some non-English text.
- Known scanner bypass classes. See the methodology and limitations page.
Sources
- Repository: https://github.com/K-Dense-AI/scientific-agent-skills
- Raw scan result: skills-geniml-scan.json
- Badge for your README:
- Request a re-scan