scikit-bio
No security findings. Scanned 1 time, most recently 2026-10-21.
Second scanner: NVIDIA SkillSpector
Independent static run, no language model, over the same files as the Cisco scan above. How the two scanners compare across the whole corpus: Two scanners, one corpus.
What this skill does
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
- Package
- 3 files, 55 KB
- SKILL.md
- 2801 words, 12+ sections
- Code
- None. Instructions only.
- Allowed tools
ReadWriteEditBash- License
- BSD-3-Clause license
- Compatibility
- Requires Python 3.10+ and scikit-bio 0.7.4 (uv pip install scikit-bio==0.7.4). NumPy 2.0+ is required. Optional matplotlib/seaborn/plotly for plotting; biom-format for BIOM tables; polars/anndata for table interoperability.
SKILL.md covers: scikit-bio · Overview · When to Use This Skill · Core Capabilities · 1. Sequence Manipulation · Read sequences from file · Sequence operations · Find motifs · Check for properties · 2. Sequence Alignment · Nucleotide alignment with BLASTN-like defaults · Build a TabularMSA from the alignment path + original sequences
Findings
No findings. SAFE
What is in the package
| File | Kind | Size |
|---|---|---|
SKILL.md | doc | 23 KB |
references/api_reference.md | doc | 23 KB |
references/review.md | doc | 8.5 KB |
External hosts referenced
github.com scikit.bio arxiv.org amplicon-docs.qiime2.org biom-format.org doi.org export.arxiv.org forum.qiime2.org pypi.org www.nature.com
Hostnames that appear in the skill's files. Referencing a host is not a finding; compare against the findings above and the skill's stated purpose.
Package contents recorded 2026-10-22 at commit 593377bb0487. The scan above ran against the version current at scan time; the two can differ if the skill has since been updated.
What we checked
- Static analyzer. Pattern rules over SKILL.md and bundled files: known-bad commands, exfiltration URLs, secrets, obfuscation.
- Bytecode analyzer.
- Pipeline analyzer.
- Correlation analyzer.
- Behavioral analyzer. Checks what the skill asks the agent to do against what its description claims it does.
- Trigger analyzer. Looks for instructions that fire on conditions the user did not ask for.
What we did not check
- Runtime behaviour. The skill was not executed; findings come from reading its files.
- Anything fetched at install or run time, including remote scripts, package dependencies, and URLs the skill tells the agent to open.
- Content the analyzers cannot read: images, binaries, and some non-English text.
- Known scanner bypass classes. See the methodology and limitations page.
Sources
- Repository: https://github.com/K-Dense-AI/scientific-agent-skills
- Raw scan result: skills-scikit-bio-scan.json
- Badge for your README:
- Request a re-scan